Super Glue does interact with coverstocks and makes them slightly more brittle. Some coverstocks are worse than others.
This is not a new phenomenon, Brunswick danger zones and their Powerkoil 18 coverstock was notorious for cracking around insert holes.
This can be minimized by beveling the edges of the holes, using as small amounts of glue as possible, not drilling the bottom of the finger holes together, and leaving an adequate bridge size.
But regardless of precautions taken it can still happen.